I'm not sure what's the standard now, but I also always set "use ssh protocol v2 only" -- and you probably should too (on the off chance that you have some ancient device that doesn't handle version 2, you should probably make an exception in that profile).
The fork I'm just about to patch is FuTTY - https://github.com/FireEgl/FuTTY which includes save-settings-to-file. The screen resizing behaviour (as a result of Screen's +flow command) might drive you crazy though.
There must be a fork with sane defaults out there somewhere.